Кому мешает ДНК-генеалогия? (примечания)
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http://www.smolensk.ru/user/sgma/MMORPH/N-44-html/tukembaev/tukembaev.htm
2
http://pereformat.ru/2015/02/klyosov-position/
3
S. Horal et al. (1992) Man's place in hominoidea revealed by mitochondrial DNA genealogy. Journal of Molecular Evolution, 35, 32–43.
4
Клёсов, Анатолий Алексеевич, Википедия.
5
Линк – там же.
6
http://berkovich-zametki.com/2007/Zametki/Nomer5/Klyosov1.htm (март 2007)
7
http://lebed.com/2007/art4914.htm (март 2007)
8
http://lebed.com/2007/art5034.htm (май 2007)
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Hammer, M.F., Behar, D.M., Karafet, T.M., Mendez, F.L., Hallmark, B., Erez, T., Zhivotovsky, L.A., Rosset, S., Skorecki, K. (2009) Response. Human Genetics, 126, 725–726.
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Klyosov, A.A. (2009) A comment on the paper: Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish Priesthood by M.F. Hammer, D.M. Behar, T.M. Karafet, F.L. Mendez, B. Hallmark, T. Erez, L.A. Zhivotovsky, S. Rosset, K. Skorecki. Human Genetics, 126, 719–724.
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Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216; Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. II. Walking the map. J. Genetic Genealogy, 5, 217–256; Klyosov, A.A. (2009) A comment on the paper: Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish Priesthood. Human Genetics, 126, 719–724; Rozhanskii, I.L., Klyosov, A.A. (2011) Mutation rate constants in DNA genealogy (Y chromosome). Advances in Anthropology, 1, No. 2, 26–34; Клёсов, A.A. (2011) Биологическая химия как основа ДНК-генеалогии и зарождение «молекулярной истории». Биохимия, 76, № 5, 636–653; Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105; Rozhanskii, I.L., Klyosov, A.A. (2012) Haplogroup R1a, its subclades and branches in Europe during the last 9,000 years. Advances in Anthropology, 2, No. 3, 139–156.
12
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216.
13
Клёсов, А.А. (2012) Микросателлиты и гены Y-хромосомы. Вестник Академии ДНК-генеалогии, т. 5, № 7, 911–913.
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Адамов, Д., Гурьянов, В., Каржавин, С., Таганкин, В., Урасин, В. (2015) Константа скорости SNP мутаций Y-хромосомы по данным полного секвенирования. The Russian Journal of Genetic Genealogy (Русская версия): Том 7, № 1,46–67.
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Underhill, P.A., Poznik, G.D., Rootsi, S., Jarve, M., Lin, A.A., Wang, J., Passarelli, B., Kanbar, J., Myres, N.M., King, R.J., Cristofaro, J.D., Sahakyan, H., Behar, D.M., Kushniarevich, A., Sarac, J.S., Saric, T., Rudan, P., Pathak, A.K., Chaubey, G., Grugni, V., Semino, O., Yepiskoposyan, L., Bahmanimehr, A., Farjadian, S., Balanovsky, O., Khusnutdinova, E.K., Herrera, R.J., Chiaroni, J., Bustamante, C.D., Quake, S.R., Kivisild, T., Villems, R. (2015) The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. European Journal of Human Genetics 23, 124–131.
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Klyosov, A.A. (2008) Basic rules of DNA genealogy (Y-chromosome). Mutation rates and their calibration. Proceedings of the Russian Academy of DNA Genealogy, 1, No. 1,3-53; Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216; Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. II. Walking the map. J. Genetic Genealogy, 5, 217–256; Klyosov, A.A. (2009) A comment on the paper: Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish Priesthood. Human Genetics, 126, 719–724; Rozhan-skii, I.L., Klyosov, A.A. (2011) Mutation rate constants in DNA genealogy (Y chromosome). Advances in Anthropology, 1, No. 2, 26–34; Клёсов, A.A. (2011) Биологическая химия как основа ДНК-генеалогии и зарождение «молекулярной истории». Биохимия, 76, № 5, 636–653; Klyosov, A.A., Rozhanskii, I.L. (2012) Haplogroup R1a as the Proto Indo-Europeans and the legendary Aryans as witnessed by the DNA of their current descendants. Advances in Anthropology, 2, No. 1, 1-13; Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105; Rozhanskii, I.L., Klyosov, A.A. (2012) Haplogroup R1a, its subclades and branches in Europe during the last 9,000 years. Advances in Anthropology, 2, No. 3, 139–156; Klyosov, A.A., Rozhanskii, I.L. (2012) Re-examining the “Out of Africa” theory and the origin of Europeoids (Caucasoids) in light of DNA genealogy. Advances in Anthropology, 2, No. 2, 80–86; Klyosov, A.A., Rozhanskii, I.L., Ryanbchenko, L.E. (2012) Re-examining the Out-of- Africa theory and the origin of Europeoids (Caucasoids). Part 2. SNPs, haplogroups and haplotypes in the Y charomosome of Chimpanzee and Humans. Advances in Anthropology, 2, No. 4, 198–213; Klyosov, A.A., Mironova, E.A. (2013) A DNA genealogy solution to the puzzle of ancient look-alike ceramics across the world. Advances in Anthropology, 3, No. 3, 164–172; Klyosov, A.A., Tomezzoli, G.T. (2013) DNA genealogy and linguistics. Ancient Europe. Advances in Anthropology, 3, No. 2, 101–111; Klyosov, A.A. (2014) Reconsideration of the "Out of Africa" concept as not having enough proof. Advances in Anthropology, 4, No. 1, 18–37; Клёсов, А.А. (2014) Опыт работы с ККК (калькулятором Килина-Клёсова) расчета времен до общих предков ^yRCA), основанный на модели случайных блужданий и с использвоанием 111 индивидуальных констант скоростей мутаций. Часть 1. Вестник Академии ДНК-генеалогии, т. 7, № 4, 626–638; Клёсов, А.А. (2014) Опыт работы с ККК (калькулятором Килина-Клёсова) расчета времен до общих предков ^yRCA), основанный на модели случайных блужданий и с использованием 111 индивидуальных констант скоростей мутаций. Часть 2. Вестник Академии ДНК-генеалогии, т. 7, № 5, 758–769; Klyosov, A.A. (2014) Reconsideration of the «Out of Africa» concept as not having enough proof. Advances in Anthropology, 4, No. 1, 18–37; E. Elha1k, T.V. Tatarinova, A.A. Klyosov, D. Graur (2014) The ‘extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of A1bert Perry's X-degenerate portion of the Y chromosome. European Journal of Human Genetics 22, 1111–1116; S. To-fanelli, L. Taglioli, S. Bertoncini, P. Francalacci, A. Klyosov, L. Pagani (2014) Mitochondrial and Y chromosome haplotype motifs as diagnostic markers of Jewish ancestry: a reconsideration. Frontiers in Genetics, 5, Article 384. doi: 10.3389/fgene.2014.0038410; Klyosov, A.A. A Comment on the Paper: Were the First Europeans Pale or Dark Skinned? Advances in Anthropology, vol. 4, No. 4, 222–226, 2014; Klyosov, A.A. (2014) Clarifying the ‘African Eve' Concept. Rock Art Research, v. 31, No. 2, 146–148; Клёсов, А.А., Тюняев, А.А. Происхождение человека (по данным антропологии, археологии, ДНК-генеалогии), М., Белые Альвы, 2010, 1020 стр.; Клёсов, А.А. (2013) Происхождение славян. М., Алгоритм, 511 с.; Клёсов, А.А. (2013) Занимательная ДНК-генеалогия. М., Вече, 168 с.; Клёсов, А.А., Пензев, К.А. (2014) Арийские народы на просторах Евразии (М, изд. «Книжный мир»), 351 стр.
17
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216. Rozhanskii I.L., Klyosov A.A. (2011) Mutation Rate Constants in DNA Genealogy (Y Chromosome). Advances in Anthropology, 1, No.2, 26–34.
18
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216; Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. II. Walking the map. J. Genetic Genealogy, 5, 217–256; Klyosov, A.A. (2009) A comment on the paper: Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish Priesthood. Human Genetics, 126, 719–724; Rozhanskii, I.L., Klyosov, A.A. (2011) Mutation rate constants in DNA genealogy (Y chromosome). Advances in Anthropology, 1, No. 2, 26–34; Клёсов, A.A. (2011) Биологическая химия как основа ДНК-генеалогии и зарождение «молекулярной истории». Биохимия, 76, № 5, 636 – 653; Klyosov, A.A., Rozhanskii, I.L. (2012) Haplogroup R1a as the Proto Indo-Europeans and the legendary Aryans as witnessed by the DNA of their current descendants. Advances in Anthropology, 2, No. 1, 1-13; Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105; Rozhanskii, I.L., Klyosov, A.A. (2012) Haplogroup R1a, its subclades and branches in Europe during the last 9,000 years. Advances in Anthropology, 2, No. 3, 139–156;
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Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186-216
20
http://r1a.org/irakaz-v03.xls, http://r1a.org/, / Интернет-сайт «R1a»; http://www.ysearch.org/, http://www.smgf.org/pages/ydatabase.jspx / Интернет-сайт «A Free Public Service from Family Tree DNA»; http://www.familytreedna.com/public/R1 aY-Haplogroup/default.aspx?section=yresults, http:// www.familytreedna.com/public/R1a/default.aspx?section=yresults, / Интернет-сайт «Family Tree DNA»; Klyosov A. A., Rozhanskii I. L. Re-Examining the «Out of Africa» Theory and the Origin of Europeoids (Caucasoids) in Light of DNA Genealogy (2012). Advances in Anthropology, 2, No.2, 80–86 http://dx.doi. org/10.4236/aa.2012.22009 (список баз данных дан в конце статьи)
21
Rozhanskii, I.L. and Klyosov A.A. (2012) Haplogroup R1a, its subclades and branches in Europe during the last 9000 years. Advances in Anthropology, v. 2, Nо. 3, 139–156.
22
Haak, W., Brandt, G., de Jong, H.N., Meyer, C., Ganslmeier, R., Heyd, V., Hawkesworth, C., Pike, A.W.G., Meller, H., Alta, K.W. (2008) Ancient DNA, Strontium isotopes, and osteological analyses shed light on social and kinship organization of the Later Stone Age. Proc. Natl. Acad. Sci. US., 105, 18226-18231.
23
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216.
24
Клёсов А.А. Происхождение славян. М, Алгоритм, 2013, глава 16.
25
Klyosov, A.A. (2008) Basic rules of DNA genealogy (Y-chromosome). Mutation rates and their calibration. Proceedings of the Russian Academy of DNA Genealogy, 1, No. 1,3-53.
26
Эти примеры подробно разобраны в книге Клёсов А.А. Происхождение славян. М., Алгоритм, 2013, глава 16.
27
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186-216
28
Rozhanskii, I.L., Klyosov, A.A. (2011) Mutation rate constants in DNA genealogy (Y chromosome). Advances in Anthropology, 1, No. 2, 26–34.
29
Там же
30
Klyosov, A.A., Rozhanskii, I.L. (2012) Re-examining the “Out of Africa” theory and the origin of Europeoids (Caucasoids) in light of DNA genealogy. Advances in Anthropology, 2, No. 2, 80–86.
31
Klyosov A. A., Rozhanskii I. L., Ryabchenko L. E. (2012) Re-Examining the Out-of-Africa Theory and the Origin of Europeoids (Caucasoids). Part 2. SNPs, Haplogroups and Haplotypes in the Y Chromosome of Chimpanzee and Humans. Advances in Anthropology, 2, No.4, 198–213.
32
Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105.
33
Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S.A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., Sirak, K., Gamba, C., Jones, E.R., Llamas, B., Dryomov, S., Pickrell, J., Arsuaga, J.L., de Castro, J.M.B., Carbonell, E., Gerritsen, F., Khokhlov, A., Kuznetsov, P., Lozano, M., Meller, H., Mochalov, O., Moiseyev, V., Guerra, M.A.R., Roodenberg, J., Verges, J.M., Krause, J., Cooper, A., Alt, K.W., Brown, D., Anthony, D., Lalueza-Fox, C.L., Haak, W., Pinhasi, R., Reich, D. (2015) Eight thousand years of natural selection in Europe. bioRxiv preprint posted online March 14, 2015; doi: http://dx.doi.org/10.1101/016477.
34
Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105.
35
Sharma, S., Ra1, E., Sharma, P., Jena, M., Singh, S., Darvishi, K., Bhat, A.K., Bhanwer, AJS, Tiwari, P.K., Bameza1, R.N.K. (2009) The Indian origin of paternal haplogroup R1a1* substantiates the autochthonous origin of Brahmins and the caste system. J. Human Genetics, 54, 47–55.
36
Клёсов, А.А. (2008) Загадки «западноевропейской» гаплогруппы R1b. Вестник Российской Академии ДНК-генеалогии, том1, № 4, 568–629; Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. II. Walking the map. J. Genetic Genealogy, 5, 217–256.
37
Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105.
38
Balter, M. (2013) Ancient DNA links native Americans with Europe. Science, 342, 409–410.
39
Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S.A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., Sirak, K., Gamba, C., Jones, E.R., Llamas, B., Dryomov, S., Pickrell, J., Arsuaga, J.L., de Castro, Carbonell, E., Gerritsen, F., Khokhlov, A., Kuznetsov, P., Lozano, M., Meller, H., Mochalov, O., Moiseyev, V., Guerra, M.A.R., Roodenberg, J., Verges, J.M., Krause, J., Cooper, A., Alt, K.W., Brown, D., Anthony, D., Lalueza-Fox, C.L., Haak, W., Pinhasi, R., Reich, D. (2015) Eight thousand years of natural selection in Europe. bioRxiv preprint posted online March 14, 2015; doi: http://dx.doi.org/10.1101/016477.
40
Klyosov, A.A., Rozhanskii, I.L., Ryanbchenko, L.E. (2012) Reexamining the Out-of- Africa theory and the origin of Europeoids (Caucasoids). Part 2. SNPs, haplogroups and haplotypes in the Y charomosome of Chimpanzee and Humans. Advances in Anthropology, 2, No. 4, 198-213
41
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216.
42
Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105.
43
Клёсов, А.А., Пензев К.А. Арийские народы на просторах Евразии, М., Книжный мир, 2014, глава 7, стр. 233.
44
http://www.isogg.org/tree/ISOGG_YDNATreeTrunk.html, / Интернет-сайт «International Society of Genetic Genealogy».
45
Klyosov, A.A., Rozhanskii, I.L. (2012) Re-examining the “Out of Africa” theory and the origin of Europeoids (Caucasoids) in light of DNA genealogy. Advances in Anthropology, 2, No. 2, 80–86.
46
http://pereformat.ru/2015/10/africa-dna-vol2/
47
Клёсов, А.А., Килин, В.В. (2015) Калькулятор Килина-Клёсова для расчета времен до общих предков (TMRCA): новое издание. Вестник Академии ДНК-генеалогии, т. 8, № 3, стр. 321–375.
48
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882688/
49
Busby, G.B.J. et al (2015) The role of recent admixture in forming the contemporary West Eurasian genomic landscape. Current Biol. 25, 1–9.
50
Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216.
51
Там же.
52
Клёсов, А.А. (2011) Биологическая химия как основа ДНК-генеалогии и зарождение «молекулярной истории». Биохимия, 76, № 5, 636–653. (с дополнениями)
53
Felsenstein, J. (2004). PHYLIP (Phylogeny Inference Package). Version 3.6. Seattle: Department of Genome Sciences, University of Washington.
54
Rozhanskii, I.L., and Klyosov, A.A. (2011) Mutation rate constants in DNA genealogy (Y Chromosome). Advances in Anthropology, 1, No.2, 26–34.
55
Клёсов, А.А. и Килин, В.В. (2015) Калькулятор Килина-Клёсова для расчета времен до общих предков (TMRCA): новое издание. Вестник Академии ДНК-генеалогии, т.8, № 3, стр. 321-375
56
Клёсов, А.А. и Килин, В.В. (2015) Калькулятор Килина-Клёсова для расчета времен до общих предков (TMRCA): новое издание. Вестник Академии ДНК-генеалогии, т.8, № 3, стр. 321-375
57
Адамов, Д.С., Клёсов, А.А. (2009) Определение возраста популяций по STR гаплотипам Y-хромосомы. Часть II. Погрешности расчетов. Вестник Российской Академии ДНК-генеалогии, т. 2, № 1, стр. 93-103; Адамов, Д.С., Клёсов, А.А. (2009) Определение возраста популяций по STR гаплотипам Y-хромосомы. Часть III. Примеры «линейных» и «квадратичных» моделей с учетом степени асимметрии мутаций. Вестник Российской Академии ДНК-генеалогии, т. 2, № 2, стр. 187–199; Klyosov, A.A. (2009) DNA Genealogy, mutation rates, and some historical evidences written in Y-chromosome. I. Basic principles and the method. J. Genetic Genealogy, 5, 186–216; Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105
58
Klyosov, A.A. (2012) Ancient history of the Arbins, bearers of haplogroup R1b, from Central Asia to Europe, 16,000 to 1500 years before present. Advances in Anthropology, 2, No. 2, 87-105.
59
Клёсов, А.А., Килин, В.В. (2015) Калькулятор Килина-Клёсова для расчета времен до общих предков (TMRCA): новое издание. Вестник Академии ДНК-генеалогии, т. 8, № 3, стр. 321–375.
60
Busby, Brisighelli, F., Sanchez-Diz, P., Ramos-Luis, E., Martinez-Cadenas, C., Thomas, M.G., Bradley, D.G., Gusmao, L., Winney, B., Bodmer, W., Vennemann, M., Coia, V., Scarnicci, F., Tofanelli, S., Vona, G., Ploski, R., Vecchiotti, C., Zemunik, T., Rudan, I., Karachanak, S., Toncheva, D., Anagnostou, P., Ferri, G., Rapone, C., Hervig, T., Moen, T., Wilson, J.F., Capelli, C. (2011) The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269. Proc. Royal Soc. B, published online, doi:10.1098/rspb.2011.1044.
61
Klyosov, A.A. (2011) The recent infamous (and fa1led) attempt to discredit the mutation rate constants. An overview of Busby et al. (2011) article in Proc. Of the Royal Soc. (B) and Dienekes Ponticos “essay” in his Anthropology Blog. Proc. Of the Russian Academy of DNA Genealogy, vol. 4. No. 9, 18311892.
62
http://r1a.org/irakaz-v03.xls, http://r1a.org/, / Интернет-сайт «R1a»; http://www.ysearch.org/, http://www.smgf.org/pages/ydatabase.jspx / Интернет-сайт «A Free Public Service from Family Tree DNA». http://www.familytreedna.com/public/R1 aY-Haplogroup/default.aspx?section=yresults, http:// www.familytreedna.com/public/R1a/default.aspx?section=yresults, / Интернет-сайт «Family Tree DNA»; Klyosov A. A., Rozhanskii I. L. Re-Examining the «Out of Africa» Theory and the Origin of Europeoids (Caucasoids) in Light of DNA Genealogy (2012). Advances in Anthropology, 2, No.2, 80–86 http://dx.doi. org/10.4236/aa.2012.22009 (список баз данных дан в конце статьи)
63
Клёсов, А.А., Килин, В.В. (2015) Калькулятор Килина-Клёсова для расчета времен до общих предков (TMRCA): новое издание. Вестник Академии ДНК-генеалогии, т. 8, № 3, стр. 321–375.
64
Discussions. The mutation rate constants in DNA genealogy and related issues. Вестник Российской Академии ДНК-генеалогии (2011), том 4, № 11,2108–2195.
65
Клёсов, А.А., Пензев, К.А. (2015) Арийские народы на просторах Евразии. М., Книжный мир, стр. 196–199.
66
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Там же
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